STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBR_g48697Uncharacterized protein. (199 aa)    
Predicted Functional Partners:
CBR_g48714
Uncharacterized protein.
   
 
 0.918
CBR_g73964
Uncharacterized protein.
    
 
 0.908
CBR_g42063
Uncharacterized protein.
    
 
 0.872
CBR_g20185
RTR1-type domain-containing protein.
    
 
 0.809
CBR_g74217
Uncharacterized protein.
   
 
 0.719
CBR_g12259
Uncharacterized protein.
   
 
 0.719
CBR_g37720
RuvB-like helicase.
   
 
 0.715
CBR_g30343
PIH1 domain-containing protein.
    
 
 0.608
CBR_g28803
PIH1 domain-containing protein.
    
 
 0.608
CBR_g21008
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.589
Your Current Organism:
Chara braunii
NCBI taxonomy Id: 69332
Other names: C. braunii
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