CBR_g51420 protein (Chara braunii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CBR_g51420

tRNA pseudouridine synthase. (363 aa)

Predicted Functional Partners:

CBR_g19915

0.860

CBR_g3460

0.846

CBR_g2844

0.846

CBR_g2845

0.846

CBR_g2839

0.846

CBR_g50116

0.846

CBR_g41367

0.763

CBR_g49328

0.713

CBR_g51921

0.713

CBR_g18642

0.712

Your Current Organism:

Chara braunii

NCBI taxonomy Id: 69332
Other names: C. braunii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBR_g18642	CBR_g19915	A0A388JTA0	A0A388KZ77	WD_REPEATS_REGION domain-containing protein.	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	0.773
CBR_g18642	CBR_g2839	A0A388JTA0	A0A388KEB7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.774
CBR_g18642	CBR_g2844	A0A388JTA0	A0A388KE12	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.774
CBR_g18642	CBR_g2845	A0A388JTA0	A0A388KE21	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.774
CBR_g18642	CBR_g3460	A0A388JTA0	A0A388JQX4	WD_REPEATS_REGION domain-containing protein.	PUA domain-containing protein.	0.774
CBR_g18642	CBR_g49328	A0A388JTA0	A0A388M4N1	WD_REPEATS_REGION domain-containing protein.	RPOLD domain-containing protein.	0.551
CBR_g18642	CBR_g50116	A0A388JTA0	A0A388M6B6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.774
CBR_g18642	CBR_g51420	A0A388JTA0	A0A388K663	WD_REPEATS_REGION domain-containing protein.	tRNA pseudouridine synthase.	0.712
CBR_g18642	CBR_g51921	A0A388JTA0	A0A388M969	WD_REPEATS_REGION domain-containing protein.	RPOLD domain-containing protein.	0.704
CBR_g19915	CBR_g18642	A0A388KZ77	A0A388JTA0	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	WD_REPEATS_REGION domain-containing protein.	0.773
CBR_g19915	CBR_g2839	A0A388KZ77	A0A388KEB7	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	Uncharacterized protein.	0.547
CBR_g19915	CBR_g2844	A0A388KZ77	A0A388KE12	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	Uncharacterized protein.	0.547
CBR_g19915	CBR_g2845	A0A388KZ77	A0A388KE21	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	Uncharacterized protein.	0.547
CBR_g19915	CBR_g3460	A0A388KZ77	A0A388JQX4	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	PUA domain-containing protein.	0.547
CBR_g19915	CBR_g49328	A0A388KZ77	A0A388M4N1	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	RPOLD domain-containing protein.	0.429
CBR_g19915	CBR_g50116	A0A388KZ77	A0A388M6B6	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	Uncharacterized protein.	0.547
CBR_g19915	CBR_g51420	A0A388KZ77	A0A388K663	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	tRNA pseudouridine synthase.	0.860
CBR_g19915	CBR_g51921	A0A388KZ77	A0A388M969	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	RPOLD domain-containing protein.	0.562
CBR_g2839	CBR_g18642	A0A388KEB7	A0A388JTA0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.774
CBR_g2839	CBR_g19915	A0A388KEB7	A0A388KZ77	Uncharacterized protein.	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	0.547