CBR_g627 protein (Chara braunii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CBR_g627

Uncharacterized protein. (654 aa)

Predicted Functional Partners:

GCP1

0.785

CBR_g20188

0.785

CBR_g26047

0.785

CBR_g46446

0.762

CBR_g23159

0.673

CBR_g23157

0.673

CBR_g42122

0.665

CBR_g36926

0.658

CBR_g3545

0.658

CBR_g36715

0.636

Your Current Organism:

Chara braunii

NCBI taxonomy Id: 69332
Other names: C. braunii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBR_g20188	CBR_g26047	A0A388KZR9	A0A388L719	Shikimate_dh_N domain-containing protein.	3-phosphoshikimate 1-carboxyvinyltransferase; Belongs to the EPSP synthase family.	0.518
CBR_g20188	CBR_g42122	A0A388KZR9	A0A388LX89	Shikimate_dh_N domain-containing protein.	IGPS domain-containing protein.	0.949
CBR_g20188	CBR_g627	A0A388KZR9	A0A388KBQ1	Shikimate_dh_N domain-containing protein.	Uncharacterized protein.	0.785
CBR_g20188	GCP1	A0A388KZR9	A0A388KPP9	Shikimate_dh_N domain-containing protein.	Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. Probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Involved in mitochondrial genome maintenance.	0.901
CBR_g23157	CBR_g23159	A0A388L415	A0A388L3Q8	Uncharacterized protein.	HSA domain-containing protein.	0.656
CBR_g23157	CBR_g3545	A0A388L415	A0A388KFN7	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.798
CBR_g23157	CBR_g36926	A0A388L415	A0A388JZF3	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.798
CBR_g23157	CBR_g46446	A0A388L415	A0A388M0N8	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.505
CBR_g23157	CBR_g627	A0A388L415	A0A388KBQ1	Uncharacterized protein.	Uncharacterized protein.	0.673
CBR_g23159	CBR_g23157	A0A388L3Q8	A0A388L415	HSA domain-containing protein.	Uncharacterized protein.	0.656
CBR_g23159	CBR_g3545	A0A388L3Q8	A0A388KFN7	HSA domain-containing protein.	TPR_REGION domain-containing protein.	0.798
CBR_g23159	CBR_g36926	A0A388L3Q8	A0A388JZF3	HSA domain-containing protein.	TPR_REGION domain-containing protein.	0.798
CBR_g23159	CBR_g46446	A0A388L3Q8	A0A388M0N8	HSA domain-containing protein.	Nudix hydrolase domain-containing protein.	0.505
CBR_g23159	CBR_g627	A0A388L3Q8	A0A388KBQ1	HSA domain-containing protein.	Uncharacterized protein.	0.673
CBR_g26047	CBR_g20188	A0A388L719	A0A388KZR9	3-phosphoshikimate 1-carboxyvinyltransferase; Belongs to the EPSP synthase family.	Shikimate_dh_N domain-containing protein.	0.518
CBR_g26047	CBR_g42122	A0A388L719	A0A388LX89	3-phosphoshikimate 1-carboxyvinyltransferase; Belongs to the EPSP synthase family.	IGPS domain-containing protein.	0.949
CBR_g26047	CBR_g627	A0A388L719	A0A388KBQ1	3-phosphoshikimate 1-carboxyvinyltransferase; Belongs to the EPSP synthase family.	Uncharacterized protein.	0.785
CBR_g26047	GCP1	A0A388L719	A0A388KPP9	3-phosphoshikimate 1-carboxyvinyltransferase; Belongs to the EPSP synthase family.	Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. Probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Involved in mitochondrial genome maintenance.	0.924
CBR_g3545	CBR_g23157	A0A388KFN7	A0A388L415	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.798
CBR_g3545	CBR_g23159	A0A388KFN7	A0A388L3Q8	TPR_REGION domain-containing protein.	HSA domain-containing protein.	0.798