Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBR_g741VWFA domain-containing protein. (3978 aa)    
Predicted Functional Partners:
CBR_g742
Uncharacterized protein.
 
  
 
0.961
CBR_g19000
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
  0.607
CBR_g20280
Uncharacterized protein.
   
  0.603
CBR_g12526
CCHC-type domain-containing protein.
    
  0.601
CBR_g26270
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
  0.588
CBR_g44528
ERCC4 domain-containing protein.
    
 0.587
CBR_g18768
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
  0.580
CBR_g38286
WD_REPEATS_REGION domain-containing protein.
    
 
 0.576
CBR_g6403
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.
    
  0.560
CBR_g23113
Uncharacterized protein.
    
  0.554
Your Current Organism:
Chara braunii
NCBI taxonomy Id: 69332
Other names: C. braunii
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