CBR_g3603 protein (Chara braunii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Chara braunii

NCBI taxonomy Id: 69332
Other names: C. braunii

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBR_g16041	CBR_g17958	A0A388JT09	A0A388KW66	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.998
CBR_g16041	CBR_g18907	A0A388JT09	A0A388KWT1	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Small nuclear ribonucleoprotein G.	0.545
CBR_g16041	CBR_g21827	A0A388JT09	A0A388JUK2	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Sm domain-containing protein.	0.524
CBR_g16041	CBR_g26483	A0A388JT09	A0A388L8D2	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.999
CBR_g16041	CBR_g3603	A0A388JT09	A0A388KFS2	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Uncharacterized protein.	0.504
CBR_g16041	CBR_g4015	A0A388JT09	A0A388KH26	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	MIF4G domain-containing protein.	0.575
CBR_g16041	CBR_g40516	A0A388JT09	A0A388K1Y8	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.998
CBR_g16041	CBR_g4062	A0A388JT09	A0A388KH51	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Nuclear cap-binding protein subunit 2.	0.914
CBR_g16041	CBR_g44940	A0A388JT09	A0A388LY02	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Small nuclear ribonucleoprotein Sm D2.	0.806
CBR_g17958	CBR_g16041	A0A388KW66	A0A388JT09	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.998
CBR_g17958	CBR_g18728	A0A388KW66	A0A388KW96	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.927
CBR_g17958	CBR_g18907	A0A388KW66	A0A388KWT1	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Small nuclear ribonucleoprotein G.	0.493
CBR_g17958	CBR_g21827	A0A388KW66	A0A388JUK2	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Sm domain-containing protein.	0.408
CBR_g17958	CBR_g26483	A0A388KW66	A0A388L8D2	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.996
CBR_g17958	CBR_g3603	A0A388KW66	A0A388KFS2	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.504
CBR_g17958	CBR_g4015	A0A388KW66	A0A388KH26	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	MIF4G domain-containing protein.	0.489
CBR_g17958	CBR_g40516	A0A388KW66	A0A388K1Y8	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.543
CBR_g17958	CBR_g4062	A0A388KW66	A0A388KH51	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Nuclear cap-binding protein subunit 2.	0.466
CBR_g17958	CBR_g44940	A0A388KW66	A0A388LY02	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Small nuclear ribonucleoprotein Sm D2.	0.566
CBR_g18728	CBR_g17958	A0A388KW96	A0A388KW66	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.927