CBR_g4353 protein (Chara braunii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CBR_g4353

CBF domain-containing protein. (1327 aa)

Predicted Functional Partners:

CBR_g20280

0.917

CBR_g22381

0.873

CBR_g29474

0.846

CBR_g22358

0.845

CBR_g30814

0.841

CBR_g32692

0.832

CBR_g38896

0.825

CBR_g227

0.803

CBR_g11154

0.797

CBR_g19000

0.793

Your Current Organism:

Chara braunii

NCBI taxonomy Id: 69332
Other names: C. braunii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBR_g11154	CBR_g19000	A0A388KQB2	A0A388KX88	RRM domain-containing protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.992
CBR_g11154	CBR_g20280	A0A388KQB2	A0A388L0D0	RRM domain-containing protein.	Uncharacterized protein.	0.998
CBR_g11154	CBR_g22358	A0A388KQB2	A0A388JUT4	RRM domain-containing protein.	Uncharacterized protein.	0.875
CBR_g11154	CBR_g22381	A0A388KQB2	A0A388JUU6	RRM domain-containing protein.	Uncharacterized protein.	0.772
CBR_g11154	CBR_g227	A0A388KQB2	A0A388JLY4	RRM domain-containing protein.	Brix domain-containing protein.	0.977
CBR_g11154	CBR_g29474	A0A388KQB2	A0A388LAM1	RRM domain-containing protein.	Uncharacterized protein.	0.992
CBR_g11154	CBR_g30814	A0A388KQB2	A0A388JXH9	RRM domain-containing protein.	Uncharacterized protein.	0.993
CBR_g11154	CBR_g32692	A0A388KQB2	A0A388LHA3	RRM domain-containing protein.	Uncharacterized protein.	0.999
CBR_g11154	CBR_g38896	A0A388KQB2	A0A388LQW4	RRM domain-containing protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.996
CBR_g11154	CBR_g4353	A0A388KQB2	A0A388KHN6	RRM domain-containing protein.	CBF domain-containing protein.	0.797
CBR_g19000	CBR_g11154	A0A388KX88	A0A388KQB2	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	RRM domain-containing protein.	0.992
CBR_g19000	CBR_g20280	A0A388KX88	A0A388L0D0	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	Uncharacterized protein.	0.999
CBR_g19000	CBR_g22358	A0A388KX88	A0A388JUT4	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	Uncharacterized protein.	0.980
CBR_g19000	CBR_g22381	A0A388KX88	A0A388JUU6	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	Uncharacterized protein.	0.948
CBR_g19000	CBR_g227	A0A388KX88	A0A388JLY4	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	Brix domain-containing protein.	0.994
CBR_g19000	CBR_g29474	A0A388KX88	A0A388LAM1	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	Uncharacterized protein.	0.953
CBR_g19000	CBR_g30814	A0A388KX88	A0A388JXH9	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	Uncharacterized protein.	0.995
CBR_g19000	CBR_g32692	A0A388KX88	A0A388LHA3	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	Uncharacterized protein.	0.996
CBR_g19000	CBR_g38896	A0A388KX88	A0A388LQW4	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.999
CBR_g19000	CBR_g4353	A0A388KX88	A0A388KHN6	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	CBF domain-containing protein.	0.793