STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBR_g6403Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (877 aa)    
Predicted Functional Partners:
CBR_g19000
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.987
CBR_g31949
Uncharacterized protein.
   
 0.987
CBR_g18581
Uncharacterized protein.
   
 0.985
CBR_g20280
Uncharacterized protein.
   
 0.983
CBR_g32274
Protein MAK16 homolog; Belongs to the MAK16 family.
   
 0.981
CBR_g149
Nop domain-containing protein.
   
 0.977
CBR_g19066
Brix domain-containing protein.
   
 0.975
CBR_g28541
Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
   
 
 0.973
CBR_g38896
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
  0.972
CBR_g18642
WD_REPEATS_REGION domain-containing protein.
   
 
 0.970
Your Current Organism:
Chara braunii
NCBI taxonomy Id: 69332
Other names: C. braunii
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