STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBR_g19719SWIRM domain-containing protein. (1317 aa)    
Predicted Functional Partners:
CBR_g48690
Uncharacterized protein.
    
 0.963
CBR_g36926
TPR_REGION domain-containing protein.
  
 0.804
CBR_g3545
TPR_REGION domain-containing protein.
  
 0.804
CBR_g29340
Uncharacterized protein.
   
 
 0.800
CBR_g21041
Uncharacterized protein.
   
 
 0.800
CBR_g25856
Uncharacterized protein.
   
 
 0.800
CBR_g24133
Uncharacterized protein.
   
 
 0.790
CBR_g28514
Hist_deacetyl domain-containing protein.
   
 0.778
CBR_g31431
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.778
GATA
Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
  
 
 0.730
Your Current Organism:
Chara braunii
NCBI taxonomy Id: 69332
Other names: C. braunii
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