CBR_g23086 protein (Chara braunii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CBR_g23086

Elongation factor Tu. (517 aa)

Predicted Functional Partners:

CBR_g22318

0.999

CBR_g3979

0.999

CBR_g19308

0.999

CBR_g21235

0.999

CBR_g26483

0.999

CBR_g37184

0.999

CBR_g38138

0.999

CBR_g41367

0.999

CBR_g41408

0.999

CBR_g49054

0.999

Your Current Organism:

Chara braunii

NCBI taxonomy Id: 69332
Other names: C. braunii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBR_g19308	CBR_g21235	A0A388KXL1	A0A388L0Z2	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Uncharacterized protein.	0.999
CBR_g19308	CBR_g22318	A0A388KXL1	A0A388JUP1	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	0.999
CBR_g19308	CBR_g23086	A0A388KXL1	A0A388L3J0	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Elongation factor Tu.	0.999
CBR_g19308	CBR_g26483	A0A388KXL1	A0A388L8D2	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.999
CBR_g19308	CBR_g37184	A0A388KXL1	A0A388LMP8	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Uncharacterized protein.	0.999
CBR_g19308	CBR_g38138	A0A388KXL1	A0A388LPD9	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal_L2_C domain-containing protein.	0.999
CBR_g19308	CBR_g3979	A0A388KXL1	A0A388KGT9	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Uncharacterized protein.	0.999
CBR_g19308	CBR_g41367	A0A388KXL1	A0A388LVY2	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.999
CBR_g19308	CBR_g41408	A0A388KXL1	A0A388LW18	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal_L18_c domain-containing protein.	0.999
CBR_g19308	CBR_g49054	A0A388KXL1	A0A388M430	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.	0.999
CBR_g21235	CBR_g19308	A0A388L0Z2	A0A388KXL1	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.999
CBR_g21235	CBR_g22318	A0A388L0Z2	A0A388JUP1	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	0.999
CBR_g21235	CBR_g23086	A0A388L0Z2	A0A388L3J0	Uncharacterized protein.	Elongation factor Tu.	0.999
CBR_g21235	CBR_g26483	A0A388L0Z2	A0A388L8D2	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.999
CBR_g21235	CBR_g37184	A0A388L0Z2	A0A388LMP8	Uncharacterized protein.	Uncharacterized protein.	0.999
CBR_g21235	CBR_g38138	A0A388L0Z2	A0A388LPD9	Uncharacterized protein.	Ribosomal_L2_C domain-containing protein.	0.999
CBR_g21235	CBR_g3979	A0A388L0Z2	A0A388KGT9	Uncharacterized protein.	Uncharacterized protein.	0.999
CBR_g21235	CBR_g41367	A0A388L0Z2	A0A388LVY2	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.999
CBR_g21235	CBR_g41408	A0A388L0Z2	A0A388LW18	Uncharacterized protein.	Ribosomal_L18_c domain-containing protein.	0.999
CBR_g21235	CBR_g49054	A0A388L0Z2	A0A388M430	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.	0.999