CBR_g23504 protein (Chara braunii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CBR_g23504

Uncharacterized protein. (337 aa)

Predicted Functional Partners:

CBR_g57845

0.999

CBR_g29503

0.806

CBR_g50283

0.751

CBR_g52746

0.741

CBR_g29464

0.735

CBR_g10902

0.719

CBR_g48222

0.719

CBR_g26157

0.718

CBR_g26159

0.718

CBR_g8983

0.713

Your Current Organism:

Chara braunii

NCBI taxonomy Id: 69332
Other names: C. braunii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBR_g10902	CBR_g23504	A0A388KPJ8	A0A388L4K7	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	Uncharacterized protein.	0.719
CBR_g10902	CBR_g26157	A0A388KPJ8	A0A388JVZ5	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	Uncharacterized protein.	0.803
CBR_g10902	CBR_g26159	A0A388KPJ8	A0A388JW22	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	MHD domain-containing protein.	0.803
CBR_g10902	CBR_g29464	A0A388KPJ8	A0A388LAG7	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	ENTH domain-containing protein.	0.770
CBR_g10902	CBR_g29503	A0A388KPJ8	A0A388LAL0	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	Alpha_adaptinC2 domain-containing protein.	0.988
CBR_g10902	CBR_g50283	A0A388KPJ8	A0A388K5B9	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	Uncharacterized protein.	0.989
CBR_g10902	CBR_g57845	A0A388KPJ8	A0A388K8I2	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	Uncharacterized protein.	0.999
CBR_g10902	CBR_g8983	A0A388KPJ8	A0A388KNF5	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	Uncharacterized protein.	0.967
CBR_g23504	CBR_g10902	A0A388L4K7	A0A388KPJ8	Uncharacterized protein.	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	0.719
CBR_g23504	CBR_g26157	A0A388L4K7	A0A388JVZ5	Uncharacterized protein.	Uncharacterized protein.	0.718
CBR_g23504	CBR_g26159	A0A388L4K7	A0A388JW22	Uncharacterized protein.	MHD domain-containing protein.	0.718
CBR_g23504	CBR_g29464	A0A388L4K7	A0A388LAG7	Uncharacterized protein.	ENTH domain-containing protein.	0.735
CBR_g23504	CBR_g29503	A0A388L4K7	A0A388LAL0	Uncharacterized protein.	Alpha_adaptinC2 domain-containing protein.	0.806
CBR_g23504	CBR_g48222	A0A388L4K7	A0A388M2K1	Uncharacterized protein.	B2-adapt-app_C domain-containing protein.	0.719
CBR_g23504	CBR_g50283	A0A388L4K7	A0A388K5B9	Uncharacterized protein.	Uncharacterized protein.	0.751
CBR_g23504	CBR_g52746	A0A388L4K7	A0A388MAS0	Uncharacterized protein.	Uncharacterized protein.	0.741
CBR_g23504	CBR_g57845	A0A388L4K7	A0A388K8I2	Uncharacterized protein.	Uncharacterized protein.	0.999
CBR_g23504	CBR_g8983	A0A388L4K7	A0A388KNF5	Uncharacterized protein.	Uncharacterized protein.	0.713
CBR_g26157	CBR_g10902	A0A388JVZ5	A0A388KPJ8	Uncharacterized protein.	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	0.803
CBR_g26157	CBR_g23504	A0A388JVZ5	A0A388L4K7	Uncharacterized protein.	Uncharacterized protein.	0.718