STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBR_g30901Uncharacterized protein. (1983 aa)    
Predicted Functional Partners:
CBR_g4741
HECT domain-containing protein.
   
 
 0.981
CBR_g34200
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 0.905
CBR_g322
Uncharacterized protein.
    
 
 0.891
CBR_g11000
Uncharacterized protein.
    
 
 0.891
CBR_g49302
CCHC-type domain-containing protein.
    
 
 0.891
CBR_g55230
Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.
    
 
 0.863
CbrRPL6
60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.
    
   0.847
CBR_g38138
Ribosomal_L2_C domain-containing protein.
    
   0.845
CBR_g49988
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
    
   0.842
CBR_g26337
Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.
    
   0.834
Your Current Organism:
Chara braunii
NCBI taxonomy Id: 69332
Other names: C. braunii
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