STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBR_g40430N-acetyltransferase domain-containing protein. (1309 aa)    
Predicted Functional Partners:
CBR_g21827
Sm domain-containing protein.
    
 0.860
CBR_g39570
Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
    
 0.847
CBR_g48393
Sm domain-containing protein.
    
 0.840
CBR_g18907
Small nuclear ribonucleoprotein G.
    
 0.838
CBR_g3308
SLBP_RNA_bind domain-containing protein.
     
 0.814
CBR_g4015
MIF4G domain-containing protein.
     
 0.689
CBR_g4062
Nuclear cap-binding protein subunit 2.
     
 0.662
CBR_g4749
Cleavage and polyadenylation specificity factor subunit 2.
    
 
 0.515
CBR_g40194
Uncharacterized protein.
    
 
 0.491
CBR_g44940
Small nuclear ribonucleoprotein Sm D2.
      
 0.485
Your Current Organism:
Chara braunii
NCBI taxonomy Id: 69332
Other names: C. braunii
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