CBR_g44368 protein (Chara braunii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CBR_g44368

Uncharacterized protein. (644 aa)

Predicted Functional Partners:

CBR_g45244

0.654

CBR_g53494

0.493

CBR_g37612

0.482

CBR_g22383

0.438

CBR_g36605

0.438

CBR_g49682

0.438

CBR_g3614

0.437

CBR_g70692

0.435

CBR_g37148

0.435

CBR_g48887

0.435

Your Current Organism:

Chara braunii

NCBI taxonomy Id: 69332
Other names: C. braunii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBR_g22383	CBR_g3614	A0A388JUV2	A0A388KFT7	PX domain-containing protein.	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.655
CBR_g22383	CBR_g37148	A0A388JUV2	A0A388LMI6	PX domain-containing protein.	Uncharacterized protein.	0.623
CBR_g22383	CBR_g37612	A0A388JUV2	A0A388LNM4	PX domain-containing protein.	RING-type domain-containing protein.	0.656
CBR_g22383	CBR_g44368	A0A388JUV2	A0A388LXF5	PX domain-containing protein.	Uncharacterized protein.	0.438
CBR_g22383	CBR_g48887	A0A388JUV2	A0A388M3Z4	PX domain-containing protein.	BTB domain-containing protein.	0.623
CBR_g22383	CBR_g70692	A0A388JUV2	A0A388K9Q7	PX domain-containing protein.	Uncharacterized protein.	0.623
CBR_g3614	CBR_g22383	A0A388KFT7	A0A388JUV2	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	PX domain-containing protein.	0.655
CBR_g3614	CBR_g36605	A0A388KFT7	A0A388JZ97	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	Uncharacterized protein.	0.655
CBR_g3614	CBR_g37148	A0A388KFT7	A0A388LMI6	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	Uncharacterized protein.	0.812
CBR_g3614	CBR_g37612	A0A388KFT7	A0A388LNM4	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	RING-type domain-containing protein.	0.924
CBR_g3614	CBR_g44368	A0A388KFT7	A0A388LXF5	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	Uncharacterized protein.	0.437
CBR_g3614	CBR_g48887	A0A388KFT7	A0A388M3Z4	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	BTB domain-containing protein.	0.812
CBR_g3614	CBR_g49682	A0A388KFT7	A0A388M5S9	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	Uncharacterized protein.	0.655
CBR_g3614	CBR_g70692	A0A388KFT7	A0A388K9Q7	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	Uncharacterized protein.	0.812
CBR_g36605	CBR_g3614	A0A388JZ97	A0A388KFT7	Uncharacterized protein.	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.655
CBR_g36605	CBR_g37148	A0A388JZ97	A0A388LMI6	Uncharacterized protein.	Uncharacterized protein.	0.623
CBR_g36605	CBR_g37612	A0A388JZ97	A0A388LNM4	Uncharacterized protein.	RING-type domain-containing protein.	0.656
CBR_g36605	CBR_g44368	A0A388JZ97	A0A388LXF5	Uncharacterized protein.	Uncharacterized protein.	0.438
CBR_g36605	CBR_g48887	A0A388JZ97	A0A388M3Z4	Uncharacterized protein.	BTB domain-containing protein.	0.623
CBR_g36605	CBR_g70692	A0A388JZ97	A0A388K9Q7	Uncharacterized protein.	Uncharacterized protein.	0.623