CBR_g49351 protein (Chara braunii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CBR_g49351

DHC_N2 domain-containing protein. (670 aa)

Predicted Functional Partners:

CBR_g45840

0.951

CBR_g45837

0.951

CBR_g22156

0.939

CBR_g53520

0.939

CBR_g49347

0.933

CBR_g53503

0.932

CBR_g31470

0.919

CBR_g32153

0.912

CBR_g57822

0.910

CBR_g34182

0.882

Your Current Organism:

Chara braunii

NCBI taxonomy Id: 69332
Other names: C. braunii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBR_g22156	CBR_g31470	A0A388L2C0	A0A388LF28	Uncharacterized protein.	Reverse transcriptase domain-containing protein.	0.941
CBR_g22156	CBR_g32153	A0A388L2C0	A0A388JMV0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.613
CBR_g22156	CBR_g34182	A0A388L2C0	A0A388LIG7	Uncharacterized protein.	Reverse transcriptase domain-containing protein.	0.938
CBR_g22156	CBR_g45837	A0A388L2C0	A0A388LZK4	Uncharacterized protein.	Uncharacterized protein.	0.947
CBR_g22156	CBR_g49351	A0A388L2C0	A0A388M509	Uncharacterized protein.	DHC_N2 domain-containing protein.	0.939
CBR_g22156	CBR_g53503	A0A388L2C0	A0A388MB63	Uncharacterized protein.	Uncharacterized protein.	0.950
CBR_g22156	CBR_g53520	A0A388L2C0	A0A388MAW5	Uncharacterized protein.	AAA_8 domain-containing protein.	0.949
CBR_g31470	CBR_g22156	A0A388LF28	A0A388L2C0	Reverse transcriptase domain-containing protein.	Uncharacterized protein.	0.941
CBR_g31470	CBR_g32153	A0A388LF28	A0A388JMV0	Reverse transcriptase domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.488
CBR_g31470	CBR_g49351	A0A388LF28	A0A388M509	Reverse transcriptase domain-containing protein.	DHC_N2 domain-containing protein.	0.919
CBR_g31470	CBR_g53520	A0A388LF28	A0A388MAW5	Reverse transcriptase domain-containing protein.	AAA_8 domain-containing protein.	0.902
CBR_g31470	CBR_g57822	A0A388LF28	A0A388K860	Reverse transcriptase domain-containing protein.	Uncharacterized protein.	0.939
CBR_g32153	CBR_g22156	A0A388JMV0	A0A388L2C0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.613
CBR_g32153	CBR_g31470	A0A388JMV0	A0A388LF28	WD_REPEATS_REGION domain-containing protein.	Reverse transcriptase domain-containing protein.	0.488
CBR_g32153	CBR_g34182	A0A388JMV0	A0A388LIG7	WD_REPEATS_REGION domain-containing protein.	Reverse transcriptase domain-containing protein.	0.574
CBR_g32153	CBR_g45837	A0A388JMV0	A0A388LZK4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.901
CBR_g32153	CBR_g45840	A0A388JMV0	A0A388LZF6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.905
CBR_g32153	CBR_g49347	A0A388JMV0	A0A388M4Q1	WD_REPEATS_REGION domain-containing protein.	DHC_N1 domain-containing protein.	0.915
CBR_g32153	CBR_g49351	A0A388JMV0	A0A388M509	WD_REPEATS_REGION domain-containing protein.	DHC_N2 domain-containing protein.	0.912
CBR_g32153	CBR_g53503	A0A388JMV0	A0A388MB63	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.488