CBR_g57502 protein (Chara braunii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CBR_g57502

ABC transporter domain-containing protein. (459 aa)

Predicted Functional Partners:

CBR_g21136

0.769

CBR_g30062

0.638

CBR_g10864

0.627

CBR_g63954

0.627

CBR_g51973

0.623

CBR_g4340

0.616

CBR_g12338

0.605

CBR_g12337

0.605

CBR_g66692

0.589

CBR_g479

0.588

Your Current Organism:

Chara braunii

NCBI taxonomy Id: 69332
Other names: C. braunii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBR_g10864	CBR_g12337	A0A388KPJ7	A0A388KRV8	Uncharacterized protein.	ACOX domain-containing protein.	0.732
CBR_g10864	CBR_g12338	A0A388KPJ7	A0A388KRS8	Uncharacterized protein.	Uncharacterized protein.	0.732
CBR_g10864	CBR_g21136	A0A388KPJ7	A0A388L0P5	Uncharacterized protein.	Uncharacterized protein.	0.779
CBR_g10864	CBR_g30062	A0A388KPJ7	A0A388LBV4	Uncharacterized protein.	Uncharacterized protein.	0.805
CBR_g10864	CBR_g4340	A0A388KPJ7	A0A388JRQ1	Uncharacterized protein.	Uncharacterized protein.	0.830
CBR_g10864	CBR_g51973	A0A388KPJ7	A0A388K6V2	Uncharacterized protein.	AMP-binding domain-containing protein.	0.841
CBR_g10864	CBR_g57502	A0A388KPJ7	A0A388ME57	Uncharacterized protein.	ABC transporter domain-containing protein.	0.627
CBR_g12337	CBR_g10864	A0A388KRV8	A0A388KPJ7	ACOX domain-containing protein.	Uncharacterized protein.	0.732
CBR_g12337	CBR_g12338	A0A388KRV8	A0A388KRS8	ACOX domain-containing protein.	Uncharacterized protein.	0.940
CBR_g12337	CBR_g21136	A0A388KRV8	A0A388L0P5	ACOX domain-containing protein.	Uncharacterized protein.	0.779
CBR_g12337	CBR_g30062	A0A388KRV8	A0A388LBV4	ACOX domain-containing protein.	Uncharacterized protein.	0.845
CBR_g12337	CBR_g4340	A0A388KRV8	A0A388JRQ1	ACOX domain-containing protein.	Uncharacterized protein.	0.777
CBR_g12337	CBR_g51973	A0A388KRV8	A0A388K6V2	ACOX domain-containing protein.	AMP-binding domain-containing protein.	0.879
CBR_g12337	CBR_g57502	A0A388KRV8	A0A388ME57	ACOX domain-containing protein.	ABC transporter domain-containing protein.	0.605
CBR_g12337	CBR_g63954	A0A388KRV8	A0A388MFG2	ACOX domain-containing protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 17 family.	0.732
CBR_g12338	CBR_g10864	A0A388KRS8	A0A388KPJ7	Uncharacterized protein.	Uncharacterized protein.	0.732
CBR_g12338	CBR_g12337	A0A388KRS8	A0A388KRV8	Uncharacterized protein.	ACOX domain-containing protein.	0.940
CBR_g12338	CBR_g21136	A0A388KRS8	A0A388L0P5	Uncharacterized protein.	Uncharacterized protein.	0.779
CBR_g12338	CBR_g30062	A0A388KRS8	A0A388LBV4	Uncharacterized protein.	Uncharacterized protein.	0.870
CBR_g12338	CBR_g4340	A0A388KRS8	A0A388JRQ1	Uncharacterized protein.	Uncharacterized protein.	0.849