Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEA47244.1snRNP Sm-like protein; COGs: COG1958 Small nuclear ribonucleoprotein (snRNP) homolog; HAMAP: snRNP Sm-like, putative, archaea; InterPro IPR006649: IPR001163: IPR022901; KEGG: apo:Arcpr_0994 like-Sm ribonucleoprotein core; PFAM: Like-Sm ribonucleoprotein (LSM) domain; SMART: Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type; SPTR: Putative snRNP Sm-like protein; PFAM: LSM domain; Belongs to the snRNP Sm proteins family. (74 aa)    
Predicted Functional Partners:
rpl37e
50S ribosomal protein L37e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family.
  
  
 0.994
fusA
Translation elongation factor aEF-2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF [...]
   
 0.925
eif5a
Translation initiation factor 5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family.
 
    0.913
rpoH
DNA-directed RNA polymerase subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family.
 
 0.905
hel308
Ski2-type helicase; DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks.
  
 0.896
rpl7ae
50S ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
  
 0.885
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.
  
  
 0.872
rps24e
COGs: COG2004 Ribosomal protein S24E; HAMAP: 30S ribosomal protein S24e; InterPro IPR001976; KEGG: apo:Arcpr_0604 ribosomal protein S24e; PFAM: Ribosomal protein S24e; SPTR: Ribosomal protein S24e; PFAM: Ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 
 0.865
rpl30e
COGs: COG1911 Ribosomal protein L30E; HAMAP: Ribosomal protein L30e; InterPro IPR000231: IPR004038; KEGG: fpl:Ferp_0759 ribosomal protein L7Ae/L30e/S12e/Gadd45; PFAM: Ribosomal protein L7Ae/L30e/S12e/Gadd45; SPTR: 50S ribosomal protein L30e; PFAM: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; Belongs to the eukaryotic ribosomal protein eL30 family.
 
  
 0.853
rpoN
DNA-directed RNA polymerase subunit N; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoN/eukaryotic RPB10 RNA polymerase subunit family.
 
 0.843
Your Current Organism:
Archaeoglobus veneficus
NCBI taxonomy Id: 693661
Other names: A. veneficus SNP6, Archaeoglobus veneficus DSM 11195, Archaeoglobus veneficus SNP6, Archaeoglobus veneficus str. SNP6, Archaeoglobus veneficus strain SNP6
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