STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rspAStarvation-sensing protein RspA. (409 aa)    
Predicted Functional Partners:
kdgK_1
2-dehydro-3-deoxygluconokinase.
 
  
  0.989
por
Polyol:NADP oxidoreductase.
 
  
  0.984
kdgA_1
KHG/KDPG aldolase.
 
     0.890
kdgK_2
2-dehydro-3-deoxygluconokinase.
 
  
  0.841
kduD_2
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase.
  
  
  0.822
ywlF
Putative sugar phosphate isomerase YwlF.
  
  
  0.801
mtlD
Mannitol-1-phosphate 5-dehydrogenase.
    
  0.751
mdlA_2
Mandelate racemase.
  
  
 
0.704
mdlA_1
Mandelate racemase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
 
0.698
kdgA_2
KHG/KDPG aldolase.
 
   
 0.620
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.