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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vpr_2Minor extracellular protease vpr precursor. (1292 aa)    
Predicted Functional Partners:
fadD_1
Long-chain-fatty-acid--CoA ligase.
  
  
  0.678
KJL39908.1
Hypothetical protein.
   
  0.672
KJL40375.1
T surface-antigen of pili.
   
  0.666
lcfB_3
Long-chain-fatty-acid--CoA ligase.
  
  
  0.652
lcfB_1
Long-chain-fatty-acid--CoA ligase.
  
  
  0.640
KJL42965.1
Long-chain-fatty-acid--CoA ligase FadD13.
  
  
  0.635
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.628
cypC
Fatty-acid peroxygenase.
   
  0.624
KJL42326.1
Putative cytochrome P450 142.
   
  0.624
KJL43854.1
Fibronectin type III domain protein.
  
  0.579
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
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