STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hypBA2_1Beta-L-arabinobiosidase precursor. (658 aa)    
Predicted Functional Partners:
xpsE
Type II secretion system protein E.
  
 0.887
hypBA1_1
Non-reducing end beta-L-arabinofuranosidase.
 
     0.865
KJL43667.1
Maltose ABC transporter periplasmic protein.
  
     0.701
KJL39815.1
ComEC family competence protein.
  
  
 0.596
xynA
Endo-1,4-beta-xylanase A precursor.
  
     0.577
KJL43652.1
Hypothetical protein.
  
     0.573
KJL43653.1
Hypothetical protein.
  
     0.538
lacF_3
Lactose transport system permease protein LacF.
  
     0.522
KJL40570.1
Hypothetical protein.
  
     0.518
pel
Pectate lyase precursor.
  
    0.498
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
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