STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdhR_2Pyruvate dehydrogenase complex repressor. (249 aa)    
Predicted Functional Partners:
mdlB
(S)-mandelate dehydrogenase.
  
    0.743
ydfH_4
Putative HTH-type transcriptional regulator YdfH.
  
  
 0.695
ydfH_1
Putative HTH-type transcriptional regulator YdfH.
  
  
 0.671
ydfH_5
Putative HTH-type transcriptional regulator YdfH.
  
  
 0.636
mce2R
HTH-type transcriptional regulator Mce2R.
  
  
 0.635
ydfH_2
Putative HTH-type transcriptional regulator YdfH.
  
  
 0.610
fadR_2
Fatty acid metabolism regulator protein.
  
     0.577
paaE
1,2-phenylacetyl-CoA epoxidase, subunit E.
    
  0.549
KJL43068.1
Hypothetical protein.
       0.546
ydfH_3
Putative HTH-type transcriptional regulator YdfH.
  
  
 0.539
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.