STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytcDPutative HTH-type transcriptional regulator YtcD. (239 aa)    
Predicted Functional Partners:
KJL42184.1
Glyoxalase-like domain protein.
 
     0.856
cdhR_2
HTH-type transcriptional regulator CdhR.
   
    0.793
yybR_2
Putative HTH-type transcriptional regulator YybR.
  
     0.732
yybR_3
Putative HTH-type transcriptional regulator YybR.
  
     0.724
yybR_1
Putative HTH-type transcriptional regulator YybR.
  
     0.723
KJL41569.1
Putative HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
   
    0.718
KJL42182.1
Hypothetical protein; RibD C-terminal domain.
       0.705
KJL41786.1
Transcriptional regulator SlyA.
   
    0.700
ytrA_2
HTH-type transcriptional repressor YtrA.
   
    0.698
KJL44809.1
Glyoxalase-like domain protein.
   
    0.691
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
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