STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nreBOxygen sensor histidine kinase NreB. (421 aa)    
Predicted Functional Partners:
degU_2
Transcriptional regulatory protein DegU.
 
 0.975
KJL41793.1
Hypothetical protein.
 
    0.934
degU_3
Transcriptional regulatory protein DegU.
 
 0.895
vraR_4
Response regulator protein VraR.
 
 0.836
degU_1
Transcriptional regulatory protein DegU.
 
 0.834
vraR_2
Response regulator protein VraR.
 
 0.832
liaR_8
Transcriptional regulatory protein LiaR.
 
 0.831
liaR_1
Transcriptional regulatory protein LiaR.
 
 0.830
vraR_1
Response regulator protein VraR.
 
 0.830
vraR_3
Response regulator protein VraR.
 
 0.827
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.