Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
xylA_1Xylose isomerase. (388 aa)    
Predicted Functional Partners:
rhaM
L-rhamnose mutarotase.
 
  
  0.974
rhaB
Rhamnulokinase.
 
  
 0.971
tsaC1_2
4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2.
 
  
 0.956
fruA
PTS system fructose-specific EIIABC component.
     
  0.822
xylA_2
Xylose isomerase; Belongs to the xylose isomerase family.
     
 0.628
xylB_2
Xylulose kinase.
    
 0.628
KJL41824.1
Nucleotidyltransferase domain protein.
       0.519
levB_1
Levanbiose-producing levanase; Belongs to the glycosyl hydrolase 32 family.
     
  0.460
levB_2
Levanbiose-producing levanase; Belongs to the glycosyl hydrolase 32 family.
     
  0.460
nlhH_4
Carboxylesterase NlhH.
       0.455
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
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