STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaML-rhamnose mutarotase. (131 aa)    
Predicted Functional Partners:
xylA_1
Xylose isomerase.
 
  
 0.982
rhaB
Rhamnulokinase.
 
  
 0.963
tsaC1_2
4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2.
 
  
 0.898
araB
Ribulokinase.
  
  
 0.714
xylB_2
Xylulose kinase.
  
  
 0.714
iolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase.
   
    0.670
KJL41824.1
Nucleotidyltransferase domain protein.
       0.526
KJL44581.1
Hypothetical protein.
  
    0.487
ybjJ_2
Inner membrane protein YbjJ.
  
  
 0.482
ybjJ_3
Inner membrane protein YbjJ.
  
  
 0.482
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
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