STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlp2Ribulose bisphosphate carboxylase-like protein 2; Belongs to the RuBisCO large chain family. (423 aa)    
Predicted Functional Partners:
KJL41834.1
Hypothetical protein.
 
   
 0.957
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.884
hypBA1_3
Non-reducing end beta-L-arabinofuranosidase.
 
     0.871
KJL41840.1
Asp/Glu/Hydantoin racemase.
 
     0.810
KJL40351.1
5'-nucleotidase.
    
 0.789
lpxD
UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase.
    
 
 0.770
dapH
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase.
    
 
 0.770
idi_3
Isopentenyl-diphosphate Delta-isomerase.
    
  0.762
KJL41847.1
Hypothetical protein.
 
     0.761
araD
L-ribulose-5-phosphate 4-epimerase.
  
 
 0.756
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
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