Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| gcvP | gdhA_1 | RS82_00611 | RS82_02475 | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | NADP-specific glutamate dehydrogenase. | 0.896 |
| gcvP | glnA_1 | RS82_00611 | RS82_03964 | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Glutamine synthetase. | 0.908 |
| gcvP | glnA_2 | RS82_00611 | RS82_03967 | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Putative glutamine synthetase 2. | 0.900 |
| gcvP | gltA2 | RS82_00611 | RS82_00108 | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Citrate synthase 1; Belongs to the citrate synthase family. | 0.407 |
| gcvP | gltB_1 | RS82_00611 | RS82_03856 | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Glutamate synthase [NADPH] small chain. | 0.865 |
| gcvP | gltB_2 | RS82_00611 | RS82_03857 | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Glutamate synthase [NADPH] large chain. | 0.968 |
| gcvP | kgd | RS82_00611 | RS82_01050 | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Multifunctional 2-oxoglutarate metabolism enzyme. | 0.996 |
| gcvP | lpdC | RS82_00611 | RS82_02078 | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Dihydrolipoyl dehydrogenase. | 0.961 |
| gcvP | nasD | RS82_00611 | RS82_01433 | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Nitrite reductase [NAD(P)H]; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.565 |
| gcvP | rocA | RS82_00611 | RS82_02421 | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.901 |
| gdhA_1 | gcvP | RS82_02475 | RS82_00611 | NADP-specific glutamate dehydrogenase. | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.896 |
| gdhA_1 | glnA_1 | RS82_02475 | RS82_03964 | NADP-specific glutamate dehydrogenase. | Glutamine synthetase. | 0.906 |
| gdhA_1 | glnA_2 | RS82_02475 | RS82_03967 | NADP-specific glutamate dehydrogenase. | Putative glutamine synthetase 2. | 0.884 |
| gdhA_1 | gltA2 | RS82_02475 | RS82_00108 | NADP-specific glutamate dehydrogenase. | Citrate synthase 1; Belongs to the citrate synthase family. | 0.890 |
| gdhA_1 | gltB_1 | RS82_02475 | RS82_03856 | NADP-specific glutamate dehydrogenase. | Glutamate synthase [NADPH] small chain. | 0.927 |
| gdhA_1 | gltB_2 | RS82_02475 | RS82_03857 | NADP-specific glutamate dehydrogenase. | Glutamate synthase [NADPH] large chain. | 0.999 |
| gdhA_1 | kgd | RS82_02475 | RS82_01050 | NADP-specific glutamate dehydrogenase. | Multifunctional 2-oxoglutarate metabolism enzyme. | 0.932 |
| gdhA_1 | lpdC | RS82_02475 | RS82_02078 | NADP-specific glutamate dehydrogenase. | Dihydrolipoyl dehydrogenase. | 0.884 |
| gdhA_1 | nasD | RS82_02475 | RS82_01433 | NADP-specific glutamate dehydrogenase. | Nitrite reductase [NAD(P)H]; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.884 |
| gdhA_1 | rocA | RS82_02475 | RS82_02421 | NADP-specific glutamate dehydrogenase. | 1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.920 |
page 1 of 5