STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadR_2Fatty acid metabolism regulator protein. (271 aa)    
Predicted Functional Partners:
idnT
Gnt-II system L-idonate transporter.
 
   
 0.659
ydfH_1
Putative HTH-type transcriptional regulator YdfH.
  
  
 0.649
mce2R
HTH-type transcriptional regulator Mce2R.
  
  
 0.624
ydfH_5
Putative HTH-type transcriptional regulator YdfH.
  
  
 0.602
ydfH_2
Putative HTH-type transcriptional regulator YdfH.
  
  
 0.579
pdhR_2
Pyruvate dehydrogenase complex repressor.
  
     0.577
gntK_1
Thermoresistant gluconokinase.
 
     0.576
paaE
1,2-phenylacetyl-CoA epoxidase, subunit E.
    
  0.549
ydfH_3
Putative HTH-type transcriptional regulator YdfH.
  
  
 0.539
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.