Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KJL41954.1Phage-related baseplate assembly protein. (175 aa)    
Predicted Functional Partners:
KJL41953.1
Hypothetical protein.
 
  
  0.961
KJL41956.1
Gene 25-like lysozyme.
 
  
 0.961
KJL41942.1
T4-like virus tail tube protein gp19.
 
  
 0.958
KJL41952.1
Hypothetical protein.
 
    0.956
KJL41943.1
Hypothetical protein.
 
     0.954
KJL41945.1
Hypothetical protein.
 
     0.954
arc
Proteasome-associated ATPase.
 
     0.954
KJL41951.1
Hypothetical protein.
 
     0.954
KJL41957.1
Hypothetical protein.
 
   
 0.954
KJL41958.1
Hypothetical protein.
 
  
  0.953
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
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