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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJL41112.1RNA polymerase sigma factor; Belongs to the sigma-70 factor family. (357 aa)    
Predicted Functional Partners:
KJL41113.1
YCII-related domain protein.
 
     0.948
KJL45373.1
YCII-related domain protein.
 
     0.777
KJL41781.1
YCII-related domain protein.
 
     0.776
KJL40290.1
YCII-related domain protein.
 
     0.775
KJL41114.1
Hypothetical protein.
       0.563
glnH_3
ABC transporter glutamine-binding protein GlnH precursor.
       0.523
glnQ_3
Glutamine transport ATP-binding protein GlnQ.
       0.484
artQ_2
Arginine transport system permease protein ArtQ.
       0.484
KJL41115.1
Transglutaminase-like superfamily protein.
       0.450
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
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