Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KJL41113.1YCII-related domain protein. (126 aa)    
Predicted Functional Partners:
KJL41112.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family.
 
     0.947
KJL45372.1
Sigma-70, region 4; Belongs to the sigma-70 factor family.
 
     0.777
KJL45539.1
RNA polymerase sigma factor.
 
     0.776
sigI_2
Putative ECF RNA polymerase sigma factor SigI; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.776
sigI_1
Putative ECF RNA polymerase sigma factor SigI; Belongs to the sigma-70 factor family.
 
     0.772
KJL40290.1
YCII-related domain protein.
  
     0.760
KJL41114.1
Hypothetical protein.
       0.563
glnH_3
ABC transporter glutamine-binding protein GlnH precursor.
       0.523
glnQ_3
Glutamine transport ATP-binding protein GlnQ.
       0.484
artQ_2
Arginine transport system permease protein ArtQ.
       0.484
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
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