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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mcbRHTH-type transcriptional regulator McbR. (229 aa)    
Predicted Functional Partners:
hpcE
Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase.
 
    0.935
bphC_3
Manganese-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase.
 
     0.880
xylG
2-hydroxymuconic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
  0.809
xylJ
2-hydroxypent-2,4-dienoate hydratase.
 
     0.770
hpcH
4-hydroxy-2-oxo-heptane-1,7-dioate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
     0.717
ydfH_3
Putative HTH-type transcriptional regulator YdfH.
  
     0.708
ydfH_1
Putative HTH-type transcriptional regulator YdfH.
  
     0.691
ydfH_2
Putative HTH-type transcriptional regulator YdfH.
  
     0.680
mce2R
HTH-type transcriptional regulator Mce2R.
  
     0.666
pcpB_2
Pentachlorophenol 4-monooxygenase.
  
     0.581
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
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