STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJL41234.1Glycosyl transferase family 11. (294 aa)    
Predicted Functional Partners:
gmd
GDP-mannose 4,6-dehydratase.
 
   
 0.801
KJL41235.1
Polysaccharide biosynthesis protein.
       0.782
fcl
GDP-L-fucose synthase.
 
     0.771
arnB_2
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase.
       0.480
arnB_3
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase.
       0.430
wbpD_2
UDP-2-acetamido-3-amino-2, 3-dideoxy-D-glucuronate N-acetyltransferase.
       0.407
ligC
4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase.
       0.407
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
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