STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpG_2Penicillin-binding protein 2D. (877 aa)    
Predicted Functional Partners:
pbpA
Penicillin-binding protein A.
 
 
 0.954
pbpB
Penicillin-binding protein PbpB.
 
 
 0.947
KJL42483.1
Cell wall synthesis protein Wag31.
 
 
 0.945
KJL40710.1
Hypothetical protein.
 
 
 0.941
eccCa1_2
ESX-1 secretion system protein EccCa1.
   
 0.799
fhaA
FHA domain-containing protein FhaA.
 
 
  0.751
KJL39697.1
Putative aminodeoxychorismate lyase.
 
  
 0.737
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
 
 
 0.735
ftsW_1
Lipid II flippase FtsW; Belongs to the SEDS family.
 
 
 0.725
KJL43848.1
FHA domain protein.
   
  0.715
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
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