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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmpCBicarbonate transport ATP-binding protein CmpC. (263 aa)    
Predicted Functional Partners:
ssuC_3
Putative aliphatic sulfonates transport permease protein SsuC.
 
 
  0.998
KJL40721.1
Binding-protein-dependent transport system inner membrane component.
 
 
  0.986
KJL40718.1
Putative thiamine biosynthesis protein.
 
 
 0.976
fgd1_4
F420-dependent glucose-6-phosphate dehydrogenase.
 
 
  0.915
ssuC_1
Putative aliphatic sulfonates transport permease protein SsuC.
 
  0.902
ssuC_2
Putative aliphatic sulfonates transport permease protein SsuC.
 
  0.901
cmpB
Bicarbonate transport system permease protein CmpB.
 
 
  0.881
KJL40723.1
D-hydantoinase.
 
     0.881
KJL42971.1
NMT1/THI5 like protein.
 
 
 0.846
ssuA_1
Putative aliphatic sulfonates-binding protein precursor.
 
 
 0.837
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
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