STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yxdLABC transporter ATP-binding protein YxdL. (260 aa)    
Predicted Functional Partners:
ytrF
ABC transporter permease YtrF precursor.
 
  0.998
macB_4
Macrolide export ATP-binding/permease protein MacB.
  0.915
macB_1
Macrolide export ATP-binding/permease protein MacB.
  0.905
mdtA
Multidrug resistance protein MdtA.
  
 0.895
macB_3
Macrolide export ATP-binding/permease protein MacB.
 
 0.836
KJL41871.1
MacB-like periplasmic core domain protein.
 
  0.831
KJL44063.1
FtsX-like permease family protein.
  
 0.793
cysA_1
Sulfate/thiosulfate import ATP-binding protein CysA; Belongs to the ABC transporter superfamily.
  
  
 
0.710
ybhF_1
Putative ABC transporter ATP-binding protein YbhF.
 
  
  0.693
fbpC
Fe(3+) ions import ATP-binding protein FbpC.
  
 
 
0.680
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
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