STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
etpLow molecular weight protein-tyrosine-phosphatase etp. (200 aa)    
Predicted Functional Partners:
ywqD
Tyrosine-protein kinase YwqD.
 
 
 0.918
ptpA_1
Putative low molecular weight protein-tyrosine-phosphatase.
  
  
 
0.875
gumD
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
 
 
 0.801
iphP_2
Tyrosine-protein phosphatase precursor.
     
 0.723
trxA_1
Thioredoxin.
  
 
 0.665
trxA_2
Thioredoxin-1; Belongs to the thioredoxin family.
  
 
 0.665
ybeY
Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
   0.630
phr
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
    
   0.629
rsmH
Ribosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
    
   0.629
KJL42200.1
Alpha-pyrone synthesis polyketide synthase-like Pks18.
    
   0.629
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
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