STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gerESpore germination protein GerE. (854 aa)    
Predicted Functional Partners:
KJL44465.1
Putative HTH-type transcriptional regulator.
  
 0.890
liaR_2
Transcriptional regulatory protein LiaR.
  
 0.890
KJL42271.1
Transcriptional regulator MalT.
  
 0.890
liaR_4
Transcriptional regulatory protein LiaR.
  
 0.890
iniC
Isoniazid-induced protein IniC.
 
     0.783
iniA
Isoniazid-induced protein IniA.
  
     0.774
KJL40855.1
Hypothetical protein.
  
     0.769
KJL45464.1
Hypothetical protein.
    
   0.620
ddn_1
Deazaflavin-dependent nitroreductase.
    
   0.620
KJL43687.1
Metallo-beta-lactamase superfamily protein.
    
   0.620
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.