STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rutD_4Putative aminoacrylate hydrolase RutD. (417 aa)    
Predicted Functional Partners:
ptsG
PTS system glucose-specific EIICBA component.
  
 
 
 0.707
KJL39880.1
Hypothetical protein.
  
     0.704
KJL39731.1
Hypothetical protein.
       0.628
rnd
Ribonuclease D.
       0.627
guaB_1
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
 
  0.547
fadB_3
Fatty acid oxidation complex subunit alpha.
 
     0.534
KJL44411.1
SURF1 family protein.
  
     0.514
KJL39845.1
Hypothetical protein.
  
     0.499
KJL43110.1
Hypothetical protein.
  
     0.460
fadA_5
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.416
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
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