STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yxlF_4Putative ABC transporter ATP-binding protein YxlF. (303 aa)    
Predicted Functional Partners:
KJL39874.1
ABC-2 family transporter protein.
 
     0.950
desK_5
Sensor histidine kinase DesK.
 
    0.801
KJL44424.1
ABC-2 family transporter protein.
  
  0.759
liaR_8
Transcriptional regulatory protein LiaR.
       0.757
drrB_2
Daunorubicin/doxorubicin resistance ABC transporter permease protein DrrB.
 
 
 0.749
oppD_2
Oligopeptide transport ATP-binding protein OppD; Belongs to the binding-protein-dependent transport system permease family.
    
  0.736
drrB_3
Daunorubicin/doxorubicin resistance ABC transporter permease protein DrrB.
 
 0.735
bmrA
Multidrug resistance ABC transporter ATP-binding/permease protein BmrA.
  
 
0.729
KJL41079.1
Putative ABC transporter ATP-binding protein.
  
 
0.728
ybhR
Inner membrane transport permease YbhR.
 
 
 0.722
Your Current Organism:
Microbacterium trichothecenolyticum
NCBI taxonomy Id: 69370
Other names: ATCC 51475, Aureibacterium trichothecenolyticum, Aureobacterium trichothecenolyticum, CIP 103817, DSM 8608, IFO 15077, LMG 16696, LMG:16696, M. trichothecenolyticum, Microbacterium sp. BDR3P1B1, NBRC 15077
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