STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBV_01010Putative Fur family transcriptional regulator; Belongs to the Fur family. (145 aa)    
Predicted Functional Partners:
OBV_00980
ABC transporter ATP-binding protein.
 
  
 0.775
OBV_00990
ABC transporter substrate-binding lipoprotein; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.733
OBV_00970
ABC transporter permease protein.
 
  
 0.678
OBV_40450
Putative zinc ABC transporter ATP-binding protein.
 
  
 0.675
OBV_29470
Putative ABC transporter substrate-binding lipoprotein; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.650
OBV_40440
ABC transporter permease protein.
 
  
 0.595
OBV_20600
Putative peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
  
  
 0.541
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.513
cdr
Protein synonym:CoA-disulfide reductase; Belongs to the sulfur carrier protein TusA family.
  
  
 0.473
OBV_17780
Hypothetical protein.
  
    0.458
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.