STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBV_02090Putative sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (380 aa)    
Predicted Functional Partners:
OBV_02150
Putative sugar ABC transporter permease protein.
 
 0.994
OBV_02160
Putative sugar ABC transporter permease protein.
 0.992
OBV_02190
Putative sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 
0.932
OBV_02140
Putative ABC transporter substrate-binding protein.
  
 0.902
modB
Putative molybdate ABC transporter permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
  
  0.892
OBV_10980
Hypothetical protein.
  
 0.860
OBV_02100
Hypothetical protein.
     
 0.795
potB
Spermidine/putrescine ABC transporter permease protein.
  
 0.795
potC
Spermidine/putrescine ABC transporter permease protein.
 
  
 0.792
OBV_11090
Amino acid ABC transporter permease protein.
  
 0.789
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.