STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBV_04210Two-component histidine kinase. (325 aa)    
Predicted Functional Partners:
OBV_04220
OmpR family two-component response regulator.
 
 0.959
OBV_04190
Putative ABC transporter permease protein.
 
 
 
 0.917
OBV_05290
OmpR family two-component response regulator.
 
 0.875
OBV_04200
Putative ABC transporter ATP-binding protein.
 
   
 0.860
acoL
Acetoin dehydrogenase E3 component; Protein synonym:dihydrolipoyl dehydrogenase.
    
 0.851
OBV_10590
Hypothetical protein.
  
 
 0.838
OBV_05320
Putative bacitracin export permease protein.
 
  
 0.834
OBV_34890
Hypothetical protein.
   
 
 0.772
OBV_41240
Hypothetical protein.
   
 
 0.754
OBV_05310
Putative ABC transporter ATP-binding protein.
 
   
 0.689
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.