STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBV_05080Hypothetical protein. (302 aa)    
Predicted Functional Partners:
OBV_05090
Hypothetical protein.
 
     0.949
OBV_31890
Hypothetical protein.
 
     0.833
OBV_31910
Hypothetical protein.
 
     0.777
OBV_05100
Hypothetical protein.
       0.572
OBV_05110
Hypothetical protein.
       0.572
OBV_31920
Protein RtcB homolog.
 
     0.545
OBV_05050
Hypothetical protein.
 
     0.537
OBV_05060
Hypothetical protein.
 
     0.460
tag
DNA-3-methyladenine glycosylase I.
       0.451
OBV_05130
Hypothetical protein.
       0.451
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.