STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBV_06280Hypothetical protein. (307 aa)    
Predicted Functional Partners:
OBV_06290
Putative iron-sulfur cluster assembly protein.
 
 0.997
OBV_30470
Putative iron-sulfur cluster assembly protein.
 
 0.982
OBV_12970
Hypothetical protein.
  
 
 0.673
OBV_13060
Putative cysteine desulfurase.
  
 
 0.673
OBV_23360
Cysteine desulfurase family protein.
  
 
 0.673
iscU
Iron-sulfur cluster assembly protein IscU.
  
  
 0.662
OBV_14490
Putative iron-sulfur cluster assembly protein.
  
  
 0.662
OBV_03240
Hypothetical protein.
  
  
 0.631
OBV_06300
Hypothetical protein.
       0.455
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.