STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBV_07110Hypothetical protein. (140 aa)    
Predicted Functional Partners:
OBV_07140
Hypothetical protein.
 
   
 0.954
OBV_07120
Putative NiFe hydrogenase small subunit.
 
     0.920
OBV_07130
Putative NiFe hydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
     0.909
hypF
Hydrogenase maturation protein HypF; Belongs to the carbamoyltransferase HypF family.
       0.804
hypD
Hydrogenase formation protein HypD.
       0.804
hypC
Hydrogenase formation protein HypC.
       0.803
OBV_07150
Hypothetical protein.
       0.800
hypE
Hydrogenase formation protein HypE.
       0.790
OBV_07100
Hypothetical protein.
       0.488
OBV_37730
Putative arginine exporter protein.
  
     0.487
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.