Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OBV_07730Hypothetical protein; Belongs to the D-glutamate cyclase family. (273 aa)    
Predicted Functional Partners:
OBV_07700
Putative Nramp family transporter.
  
 0.994
OBV_15690
Hypothetical protein.
     0.980
OBV_07710
Putative regulatory protein.
 
    0.939
OBV_07720
Putative regulatory protein.
    0.892
pxpA
Hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
    0.845
OBV_38110
Hypothetical protein.
 
     0.718
OBV_07740
Hypothetical protein.
       0.496
OBV_01040
Putative IclR family transcriptional regulator.
  
    0.466
OBV_01470
Putative IclR family transcriptional regulator.
  
    0.466
OBV_03730
Putative IclR family transcriptional regulator.
  
    0.466
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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