Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OBV_08930Hypothetical protein. (240 aa)    
Predicted Functional Partners:
OBV_08920
Hypothetical protein.
 
     0.958
OBV_08910
Putative transcriptional regulator.
 
     0.834
OBV_08880
Hypothetical protein.
 
     0.790
hupB
Putative uptake hydrogenase subunit HupB.
    
 0.708
OBV_28860
Pyruvate-ferredoxin (flavodoxin) oxidoreductase.
     
 0.600
OBV_29600
Putative oxidoreductase.
    
 0.547
OBV_01090
Pyruvate-ferredoxin (flavodoxin) oxidoreductase.
     
 0.520
OBV_03740
Pyruvate-ferredoxin (flavodoxin) oxidoreductase.
     
 0.520
OBV_35340
Pyruvate-ferredoxin (flavodoxin) oxidoreductase.
     
 0.520
OBV_45490
Pyruvate-ferredoxin (flavodoxin) oxidoreductase.
     
 0.520
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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