Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OBV_09360Putative recombinase; Fragment. (268 aa)    
Predicted Functional Partners:
OBV_09370
Putative recombinase; Fragment.
      0.857
OBV_21880
Putative site-specific recombinase.
  
     0.767
OBV_05770
Putative recombinase.
  
     0.761
OBV_17690
Putative site-specific recombinase.
  
     0.733
OBV_15450
Putative recombinase.
  
     0.732
OBV_30550
Putative site-specific recombinase.
  
     0.728
OBV_24150
Putative integrase.
  
     0.705
OBV_30560
Putative site-specific recombinase.
  
     0.682
OBV_45220
Putative site-specific recombinase; Fragment.
  
     0.680
OBV_30540
Putative site-specific recombinase.
  
     0.668
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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