STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBV_09620Aminotransferase. (393 aa)    
Predicted Functional Partners:
OBV_33660
Methionine gamma-lyase.
  
 
 0.921
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
  
 0.914
metK-2
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
  
 0.914
mmuM
Homocysteine S-methyltransferase.
  
 
 0.905
pheA
Chorismate mutase/prephenate dehydratase; Bifunctional protein; protein synonym:P-protein.
 
  
 0.699
OBV_12080
Oxidoreductase iron-sulfur subunit.
 
      0.531
gltB
Glutamate synthase large subunit; Protein synonym:GLTS alpha chain; protein synonym:NADPH-GOGAT; protein synonym:glutamate synthase [NADPH] alpha subunit.
  
  
 0.503
OBV_09630
Putative MarR family transcriptional regulator.
       0.449
OBV_09610
Hypothetical protein.
       0.416
ntpC
V-type Na(+)-transporting ATPase C subunit.
   
 
  0.409
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.