STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBV_11020Sugar ABC transporter sugar-binding protein. (376 aa)    
Predicted Functional Partners:
OBV_11040
Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.985
OBV_11030
Sugar ABC transporter ATP-binding protein.
 
 0.977
rbsC-3
Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.826
rbsC-2
Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.823
rbsA-2
Ribose ABC transporter ATP-binding protein.
 
 0.809
OBV_26930
Sugar ABC transporter ATP-binding protein.
 
 0.754
OBV_26920
Sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.747
rbsC
Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.737
rbsB-2
Ribose ABC transporter ribose-binding protein.
 
 
0.720
rbsB
Ribose ABC transporter ribose-binding protein.
 
 
0.690
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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